Publications

Year

Publication List

2010



• Kedzierska, K., Valkenburg, S.A., Guillonneau, C., Hubert, F-X., Cukalac. T., Curtis, J.M., Stambas, J., Scott, H.S., Kedzierski, L., Venturi, V., Davenport, M.P. (2010) Diversity and clonotypic composition of influenza-specific CD8⁺ TCR repertoires remain unaltered in the absence of Aire. European Journal of Immunology. 40, 1-11 [I.F = 4.662]
  


• Schlub, T.E., Badovinac, V.P, Sabel, J.T., Harty, J.T., Davenport, M.P. (2010) Predicting the expression of CD62L during the CD8+ T cell response in vivo. Immunology and Cell Biology. 88, 157 [I.F. = 3.859]
  


• Rudd, B.D., Venturi, V., Smithey, M.J., Way, S.S., Davenport, M.P., and Nikolich-Zugich, J. Diversity of the CD8+ T Cell Repertoire Elicited against an Immunodominant Epitope Does Not Depend on the Context of Infection. Journal of Immunology. [I.F. = 6.293] (evaluated by Faculty of 1000 Biology as a “Recommended”. http://f1000biology.com/article/id/2302999 )
  


• Coupland, L.A., Cromer, D., Davenport, M.P., and Parish, C.R. Thrombopoietin signalling and Bcl-X_L influence, respectively, platelet and erythrocyte lifespans. Experimental Hematology. (in press 4.3.10) [I.F. =3.203]
  


• Schlub, T., Smyth, R.P., Grimm, A., Mak J., Davenport, M.P. Measuring recombination between closely related HIV-1 genomes. PLoS Computational Biology. 6(4) e100766 [I.F. =5.895]
  


• Rajasuriar, R., Booth, D., Solomon, A., Chua, K., Spelman, T., Gouillou, M., Schlub, T., Davenport, M., Crowe, S., Elliott, J., Hoy, J., Fairley, C., Stewart, G., Cameron, P., Lewin, S. Biological determinants of immune reconstitution in HIV-infected patients on antiretroviral therapy: the role of IL7/IL-7Rα and microbial translocation. Journal of Infectious Diseases. [I.F. =5.682]. In press 14.5.10.
  


• Liang, S.X., Pinkevych, M., Khachigian, L.M., Parish, C.R., Davenport, M.P., and Chong, B.H. Drug-induced thrombocytopenia: Development of a novel NOD/SCID mouse model to evaluate clearance of circulating platelets by drug-dependent antibodies and the efficacy of IVIG. Blood [in press 22.5.10] [I.F. =10.43]
  


• Chan, M.L., Petravic, J., Ortiz, A.M., Engram, J., Paiardini, M., Cromer, D., Silvestri, G., and Davenport, M.P. Limited CD4+ T cell proliferation leads to preservation of CD4+ T cell counts in SIV infected Sooty Mangabeys. Proc Roy Soc London series B (Biology) [in press 9.6.10] [I.F. =4.284] (Basis for story on ABC Science online 30.6.10 : http://www.abc.net.au/science/articles/2010/06/30/2940204.htm)
  


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2009



• Schlub, T.E., Venturi, V., Kedzierska, K., Wellard, C., Doherty, P.C., Turner, S.J., Ribeiro, R.M., Hodgkin, P.D., Davenport, M.P., (2009) Division-linked differentiation can account for CD8+ T cell phenotype in vivo. European Journal of Immunology. 39, 67-77 [I.F = 4.662] (Commentary on article published in same issue, pp 47-49)
  


• Lay, M.D.H., Zhang, L., Ribeiro, R.M., Mueller, S.N., Belz, G.T., Davenport, M.P. (2009) Kinetics of Major Histocompatibility Class I Antigen Presentation in Acute Infection. Journal of Immunology. 182, 902-11 [I.F. = 6.293]
  


• Davenport, M.P., Belz, G.T., Ribeiro, R.M. (2009) The race between infection and immunity – How do pathogens set the pace? Trends in Immunology. 30, 61-66 [I.F. = 9.480]


• Cromer, D., Stark, J., and Davenport, M.P. (2009) Low red cell production may protect against severe anemia during malaria infection – insights from modeling. Journal of Theoretical Biology. 257, 533-542) [I.F. = 2.323]
  


• Price DA, Asher TE, Wilson NA, Nason MC, Brenchley JM, Metzler IS, Venturi V, Gostick E, Chattopadhyay PK, Roederer M, Davenport MP, Watkins DI, Douek DC. (2009). Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection. J. Exp. Med. 206, 923-936. [I.F. = 15.61] (evaluated by Faculty of 1000 Medicine as a “must read” http://www.f1000medicine.com/article/id/1160053/evaluation)
  


• Loh, L., Reece, J.C., Fernandez, C.S., Alcantara, S., Center, R., Howard, J., Purcell, D.F.J., Balamurali, M., Patravic, J., Davenport, M.P., Kent, S.J. (2009) Complexity of inoculum determines rate of reversion of SIV Gag CD8 T cell mutant virus and outcome of infection. PLoS Pathogens. 5:e1000378 [I.F. = 9.125]
  


• Lay, M.D.H., Petravic, J., Gordon, S.N., Engram, J., Silvestri, G., and Davenport, M.P. (2009) Is gut the major source of virus in early SIV infection? Journal of Virology. 83, 7517 [I.F. = 5.341] [Chosen by Editors for a “Spotlight” in the 1 August issue][Chosen for a commentary by the “Treatment Action Group” online basic science blog: http://www.treatmentactiongroup.org/basicsciblog.aspx?id=3100&blogid=88].
  Featured on MDLinx: http://www.mdlinx.com/idlinx/news-article.cfm/2790762
  


• Greenaway, H.Y., Kurniawan, M., Price, D.A., Douek, D.C., Davenport, M.P. and Venturi, V. (2009) Extraction and characterization of the rhesus macaque T cell receptor β-chain genes. Immunology and Cell Biology 87, 546 [I.F. = 3.859]
  


• Yang, H., Guimarães-Walker, A., Hibbs, S., Peng, Y., Dong, T., Stacey, A., Borrow, P., Hanke, T., Davenport, M.P., McMichael, A., Dorrell, L. (2009) Interleukin-10 responses to therapeutic vaccination during HAART and after analytical therapy interruption. AIDS 23, 2226 [I.F. = 5.46]
  


• Cukalac, T., Moffat, J.M., Venturi, V., Davenport, M.P., Doherty, P.C., Turner, S.J., and Stambas, J. (2009) Narrowed TCR diversity for immunised mice challenged with recombinant influenza A-HIV Env311-320 virus. Vaccine 27, 6755 [I.F. = 3.298]
  


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2008



• Venturi, V., Kedzierska, K., Tanaka, M.M., Turner, S.J., Doherty, P.C., and Davenport M.P. Method for assessing the similarity between subsets of the T cell receptor repertoire. Journal of Immunological Methods (2008) 329, 67-80 [I.F. = 2.572]
  


• Loh, L., Petravic, J., Batten, C.J., Davenport, M.P., Kent, S.J. (2008) Vaccination and timing influence SIV immune escape viral dynamics in vivo. PLoS Pathogens 4(1) E12 [I.F. = 9.125]
  


• Venturi, V., Price, D. A., Douek, D., and Davenport, M.P. The molecular basis for public T cell responses. (2008) Nature Reviews Immunology. 8, 231- 238 [I.F. = 28.697]
  


• Petravic, J., Loh, L., Kent, S.J., and Davenport, M.P. CD4+ Target cell availability determines the dynamics of immune escape and reversion in vivo. (2008) Journal of Virology. 82, 4091-4101 [I.F. = 5.341]
  


• Melenhorst, J.J., Lay, M.D.H., Price, D.A., Adams, S.D., Zeilah, J., Sosa, E., Hensel, N.F., Follmann, D., Douek, D.C., Davenport, M.P., and Barrett, A.J. Contribution of the T cell receptor-β locus and HLA to the shape of the mature human Vβ repertoire. (2008) Journal of Immunology 180. 6484- 6489 [I.F. = 6.293]
  


• Kedzierska, K., Venturi, V., Davenport, M.P., Turner, S.J., Doherty, P.C. Homogenization of TCR Repertoires within Secondary CD62Lhi and CD62Llo Virus-Specific CD8+ T Cell Populations. (2008) Journal of Immunology. 180. 7938-7947 [I.F. = 6.293]
  


• Smith, M.Z., Asher, T.E., Venturi, V., Davenport, M.P., Douek, D.C., Price, D.A., and Kent, S.J. (2008) Limited maintenance of vaccine-induced SIV-specific CD8 T cell receptor clonotypes after virus challenge. Journal of Virology. 82. 7357-7368 [I.F. = 5.341]
  


• Venturi, V., Chin, H.Y., Price, D.A., Douek, D.C., and Davenport, M.P. (2008) The role of production frequency in the sharing of SIV specific CD8+ T cell receptors between macaques. Journal of Immunology. 181, 2597-2609 [I.F. = 6.293]
  


• Kedzierska, K., Thomas, P.G., Venturi, V., Davenport, M.P., Doherty, P.C., Turner, S.J., and La Gruta, N.L. (2008) TdT is required for the establishment of private virus-specific CD8+ TCR repertoires and facilitates optimal CTL responses. Journal of Immunology. 181, 2556-2562 [I.F. = 6.293]
  


• Chavez, L.L., Davenport, M.P., Shiver, J.W., Tussey, L.G., Cox, K.S., Bachinsky, M., Wang, F., Huang, L., Schleif, W.A., Davies, M., Tang, A., Casimiro, D.R., Perelson, A.S. (2008) The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection. Virology. 381, 75-80 [I.F. = 3.765]
  


• Rudd, B.D., Brien, J.D., Davenport, M.P., and Nikolich-Zugich, J. (2008) (Cutting Edge) TLR ligands increase T cell receptor triggering by slowing peptide:MHC class I decay rates. Journal of Immunology. 181, 5199-5203 [I.F. = 6.293] (evaluated by Faculty of 1000 Biology as a “recommended” http://f1000biology.com/article/id/1124813)
  


• Petravic, J., Ribeiro, R.M., Casimiro, D.R., Mattapallil, J.J., Roederer, M., Shiver, J.W., Davenport, M.P. (2008) Estimating the impact of vaccination in acute SHIV / SIV infection. Journal of Virology. 82, 11589-11598 [I.F. = 5.341]
  


• Davenport, M.P., Loh, L., Petravic, J., Kent, S.J., (2008) Rates of HIV immune escape and reversion: Implications for vaccination. Trends in Microbiology. 16. 561-566 [I.F. = 7.618]
  


• Venturi, V., Chin, H.Y., Asher, T.E., Ladell, K., Scheinberg, P., Bornstein, E., van Bockel, D., Kelleher§, A.D., Douek, D.C., Price, D.A., and Davenport, M.P. (2008) TCR β-chain sharing in human CD8+ T cell responses to cytomegalovirus and EBV. Journal of Immunology. 181, pp7853-7862 [I.F. = 6.293] (Featured in the Editor’s “In This Issue” section, 181, p7434)
  


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2007



• De Rose, R, Batten, C.J., Smith, M.Z., Fernandez, C.S., Peut, V., Thomson, S., Ramshaw, I.A., Coupar, B.E.H., Boyle, D.B., Venturi, V., Davenport, M.P., Kent, S.J. (2007) Comparative efficacy of subtype AE simian-human immunodeficiency virus priming and boosting vaccines in pigtail macaques. Journal of Virology 81, 292-300 [I.F. = 5.341]
  


• Venturi, V. Kedzierska, K, Turner, S.J., Doherty, P.C., and Davenport, M.P. (2007) Methods for comparing the diversity of samples of the T cell receptor repertoire. Journal of Immunological Methods 321, 182-195 [I.F. = 2.572](Comment on the presentation of this at 2007 Keystone Immunological Memory conference) in: EMBO reports, v8, p823)
  


• Fernandez, C.S., Smith, M.Z., Batten, C.J., de Rose, R., Reece, J.C., Rollman, E., Venturi, V., Davenport, M.P., and Kent, S.J. (2007) Vaccine-induced T cells control reversion of AIDS virus immune escape mutants. Journal of Virology 81. 4137-4144 [I.F. = 5.341]
  


• Orr, Y., Wilson, D.P., Taylor, J.M., Bannon, P.G., Geczy, C., Davenport, M.P., Kritharides, L. (2007) A kinetic model of bone marrow neutrophil production which characterizes late phenotypic maturation. American Journal of Physiology – Regulatory, Integrative and Comparative Physiology 292, R1707-1716 [I.F. = 3.802]
  


• Karlsson, A.C., Iversen, A.K.N., Chapman, J.M., de Oliviera, T., Spotts, G., McMichael, A.J., Davenport, M.P., Hecht, F.M., and Nixon, D.F. (2007) Sequential broadening of CTL responses in early HIV-1 infection is associated with viral escape. PLoS One 2, e225
  


• Belz, G.T., Zhang, L., Lay, M., Kupresanin, F., and Davenport, M.P. (2007) Killer T cells regulate antigen presentation for early expansion of memory, but not naïve, CD8+ T cells. Proceedings of the National Academy of Sciences (USA) 104, 6341-6346 [I.F. = 10.452] (evaluated by Faculty of 1000 Biology as a “recommended”: http://www.f1000biology.com/article/id/1089441/evaluation)
  


• Loh, L., Batten, C.J., Petravic, J.P., Davenport, M.P., Kent, S.J.(2007) In vivo fitness costs of different Gag CD8 T cell escape mutant simian-human immunodeficiency viruses in macaques. Journal of Virology 81, 5418-5422 [I.F. = 5.341]
  


• Wilson, D.P., Mattapallil, J.J., Lay, M., Zhang, L., Roederer, M., Davenport, M.P. (2007) Estimating the infectivity of CCR5-tropic SIVmac251 in the gut. Journal of Virology 81, 8025-8029 [I.F. = 5.341]
  


• Crough, T., Fazou, C., Weiss, J., Campbell, S., Davenport, M.P., Bell, S.C., Galbraith, A., McNeil, K., and Khanna, R. (2007) Symptomatic and Asymptomatic Viral Recrudescence in Solid Organ Transplant Recipients and its Relationship with Antigen-Specific CD8+ T-cell Response. Journal of Virology 81, 11538-11542 [I.F. = 5.341]
  


• van Bockel, D., Price, D. A., Asher, T. E., Venturi, V., Suzuki, K., Warton, K., Davenport, M. P., Cooper, D. A., Douek, D. C., and Kelleher, A. D. (2007) Validation of RNA-based molecular clonotype analysis for virus-specific CD8+ T-cells in formaldehyde-fixed specimens isolated from peripheral blood. Journal of Immunological Methods 326, 127-138 [I.F. = 2.572]
  


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2006



• Ribeiro, R.M., Hazenberg, M.D. Perelson, A.S., and Davenport, M.P. (2006) Naïve and memory cell turnover as drivers of CCR5 to CXCR4 tropism switch in HIV-1: implications for therapy. Journal of Virology 80: 802-809 [I.F. = 5.341]
  


• Davenport, M. P., Zhang, L., Shiver, J. W., Casimiro, D. R., Ribeiro, R. M., and Perelson, A. S. (2006) Influence of peak viral load on the extent of CD4+ T cell depletion in SHIV infection. Journal of Acquired Immune Deficiency Syndromes 41: 259-265 [I.F. = 4.1]
  


• La Gruta, N., Kedzierska, K., Pang, K., Webby, R., Davenport, M.P., Chen, W., Turner, S., Doherty, P.C. (2006) A virus specific CD8+ T cell immunodominance hierarchy determined by antigen dose and precursor frequencies. Proceedings of the National Academy of Sciences (USA) 103: 994-999 [I.F. = 10.452]
  (evaluated by Faculty of 1000 Biology as a “recommended”)


• Kedzierska, K., Venturi, V., Field, K., Davenport, M.P., Turner, S.J., and Doherty, P.C. (2006) Early establishment of diverse T cell receptor profile for influenza specific CD8+ CD62Lhi memory cells. Proceedings of the National Academy of Sciences (USA) 103: 9184-9189 [I.F. = 10.452]
  


• Cromer, D., Evans, K.J, Schofield, L., Davenport, M.P. (2006) Preferential invasion of reticulocytes during late-stage Plasmodium berghei infection accounts for reduced circulating reticulocyte levels. International Journal for Parasitology 36: 1389-1397 [I.F. = 3.346]
  


• Venturi, V., Kedzierska, K, Price, D.A., Turner, S.J., Doherty, P.C., Douek, D.C., and Davenport, M.P. (2006) Sharing of T cell receptors in antigen specific responses is driven by convergent recombination. Proceedings of the National Academy of Sciences (USA) 103, 18691-18696 [I.F. = 10.452] (evaluated by Faculty of 1000 Biology as a “must read”: http://www.f1000biology.com/article/id/1054742/evaluation)


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2005



• Crough, T.,. Burrows, J.M., Fazou, C., Walker, S., Davenport, M.P., and Khanna, R. (2005) Contemporaneous Fluctuations in T-cell Responses to Persistent Herpes Virus Infections. European Journal of Immunology 35: 139-149 [I.F = 4.536]
  


• Fernandez, C.S., Stratov, I., De Rose, R., Walsh, K., Dale, C.J., Smith, M.Z., Agy, M.B., Hu, S-L., Krebs, k., Watkins, D.I., O'Connor, D.H., Davenport, M.P., and Kent, S.J. (2005) Rapid viral escape at an immunodominant SHIV CTL epitope extracts a dramatic fitness cost. Journal of Virology 79: 5721-31 [I.F. = 5.341]
  


• Kent, S.J., Fernandez, C.S., Dale, C.J., and Davenport, M.P. (2005) Reversion of immune escape HIV variants upon transmission: insights into effective viral immunity. Trends in Microbiology 13: 243-246 [I.F. = 8.160]
  


• Davenport, M. P., Zhang, L., Bagchi, A., Fridman, A., Fu, T. M. , Schleif, W. A., Shiver, J. W., Ribeiro, R. M., and A. S. Perelson. (2005). High potency HIV vaccination leads to delayed and reduced CD8+ T cell expansion, but nevertheless improved viral control. Journal of Virology, 79: 10059-10062 [I.F. = 5.341]
  


• Godkin, A., Davenport, M., and Hill, A.V.S. (2005) Molecular analysis of HLA class II associations with hepatitis B virus clearance and vaccine non-responsiveness. Hepatology 41: 1383-1390 [I.F. = 9.503]
  


• Smith M.Z., Fernandez C.S., Chung A., Dale, C.J., De Rose R., Lin J., Brooks A.G., Krebs K.C., Watkins D.I., O’Connor D.H., Davenport M.P., Kent S.J. (2005) The pigtail macaque MHC class I allele Mane-A*10 presents an immunodominant SIV Gag epitope: identification, tetramer development and implications of immune escape and reversion. Journal of Medical Primatology 34: 282-293 [I.F. = 0.787]
  


• Kedzierska, K., La Gruta, N., Davenport, M.P., Turner, S.J., and Doherty, P.C. (2005) Contribution of T cell receptor affinity to the overall avidity in virus-specific CD8+ T cell responses. Proceedings of the National Academy of Sciences (USA) 102: 11432-11437 [I.F. = 10.452]
  


• Chao, D.L., Davenport, M.P., Forrest, S., Perelson, A.S. (2005) The effects of thymic selection on the range of T cell cross reactivity. European Journal of Immunology 35: 2452-9 [I.F = 4.536]
  


• Legrand, F. A., Abadi, J., Jordan, K. A., Davenport, M. P., Deeks, S. G., Fennelly, G. J., Wiznia, A. A., Nixon, D. F., and Rosenberg, M. G. (2005) Partial treatment interruption of protease inhibitors augments HIV-specific immune responses in vertically infected pediatric patients. AIDS 19: 1575-1585 [I.F. = 5.893]
  


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2004



• Chao, D.L., Davenport, M.P., Forrest, S., and Perelson, A.S. (2004) Modelling the impact of antigen kinetics on T cell activation and response. Immunology and Cell Biology, 82:55-61 [I.F. = 2.494]
  


• Chao, D.L., Davenport, M.P., Forrest, S., and Perelson, A.S. (2004) A Stochastic model of cytotoxic T cell responses. Journal of Theoretical Biology, 228:227-240 [I.F. = 1.552]
  


• Zhang, L., Ribeiro, R.M., Mascola, J.R., Lewis, M.G., Steigler, G., Katinger, H., Perelson, A.S., Davenport, M.P. (2004) Effects of antibody on viral kinetics in SHIV infection: Implications for vaccination. Journal of Virology, 78:5520-5522 [I.F. = 5.341]
  


• Davenport, M.P., Ribeiro, R.M. and A. S. Perelson. (2004) Kinetics of virus specific CD8+ T cells and the control of HIV infection. Journal of Virology. 78:10096-10103 [I.F. = 5.341]
  


• Davenport, M. P., Ribeiro, R.M., Chao, D. L. , and Perelson, A. S. (2004) Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus. Journal of Virology. 78:11340-51 [I.F. = 5.341]
  


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2003



• Murray, J. M., Kaufmann, G.R., Hodgkin, P.D., Lewin, S.R., Kelleher, A.D., Davenport, M.P., and J. J. Zaunders, J.J. (2003). Naive T cells are maintained by thymic output in early ages but by proliferation without phenotypic change after age twenty. Immunology and Cell Biology, 81:487-495. [I.F. = 2.494]
  


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